============================================================================ Data of the Pacific bluefin tuna predicted genes (CDS) version 1.0 National Research Institute of Fisheries Science, Fisheries Research Agency Last updated: Fbruary 1, 2016 ============================================================================ -------------------- Files: -------------------- Predicted genes CDS: FASTA-formatted nucleotide sequences (CDS) of 26,433 predicted genes (Nakamura et al., 2013). Proteins: FASTA-formatted amino acid sequences of predicted coding regions. Additional information Scaffold: 16,802 scaffold sequences from the Thunnus orientalis draft genome assembly (Nakamura et al., 2013) in FASTA format. Augustus gene models: Information on protein-coding regions predicted by Augustus (Stanke M, et. al. 2008) ver. 2.5.5. The file is provided in GFF format. -------------------- Citation: -------------------- 1. Nakamura Y, Mori K, Saitoh K, Oshima K, Mekuchi M, Sugaya T, Shigenobu Y, Ojima N, Muta S, Fujiwara A, Yasuike M, Oohara I, Hirakawa H, Chowdhury VS, Kobayashi T , Nakajima K, Sano M, Wada T, Tashiro K, Ikeo K, Hattori M, Kuhara S , Gojobori T, Inouye K. Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna. Proc Natl Acad Sci U S A. 2013;110:11061-6. doi: 10.1073/pnas 2. Yasuike M, Fujiwara A, Nakamura Y, Iwasaki Y, Nishiki I, Sugaya T, Shimizu A, Sano M, Kobayashi T, Ototake M. A functional genomics tool for the Pacific bluefin tuna: Development of a 44K oligonucleotide microarray from whole-genome sequencing data for global transcriptome analysis. Gene. 2016;576:603-609. doi: 10.1016/j.gene.2015.10.023. -------------------- Contact us: -------------------- Email: FRA-bioinfo@ml.affrc.go.jp -------------------- Copyrights (c) NRIFS-FRA All rights reserved. --------------------